PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010094863.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family C2H2
Protein Properties Length: 518aa    MW: 57554.1 Da    PI: 5.548
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010094863.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.99.3e-07264285223
                     EETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                      C +Cgk F+r  nL+ H+r H
  XP_010094863.1 264 FCAICGKGFKRDANLRMHMRGH 285
                     6*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.62E-5261288No hitNo description
SMARTSM003550.012263285IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.884263290IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.9E-6264314IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280265285IPR007087Zinc finger, C2H2
SMARTSM0035553312345IPR015880Zinc finger, C2H2-like
SMARTSM0035536350372IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010044Biological Processresponse to aluminum ion
GO:0010447Biological Processresponse to acidic pH
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    Send to blast
MDLEEADQWA NCSSKKELSS SYSNFDSRQL QQQKWDDSSI LDYDIGIEQS FQEFNQPSAA  60
TIPLNPNDQA KILGQGDVPM LDAIRANKIP DWDARTMLNN LSFLEEKIHQ LQDLVHFIVG  120
RRSQVLGRPD DLVAQQQQLV TADITSIISQ LITTAGSLLP SLKHAVSDAA PSVGQLLQPG  180
GVDLSPVLAM NGSVQPQNDG RSKIPDESNK TDITAHYGGE QNNNFDEHEL KDEEDVDEGE  240
HLPPGTYEIL QLEKEEILAP HTHFCAICGK GFKRDANLRM HMRGHGDEYK TPAALAKPHK  300
ESGSEPMVIK RYSCPYAGCK RNKDHKKFQP LKTILCVKNH YKRTHCDKSY TCSRCHTKKF  360
SVIADLKTHE KHCGKDKWLC SCGTTFSRKD KLFGHIALFQ GHTPAIPVDE TKGSAVPADY  420
VTEIEAGNKS SVSSTNFNFP SDSQGENAAP NIVDVKGNLD DPAAYFSPMN FETCNFGGFH  480
EFPRPPFEDS ESSFSFLLSA SCNYPQKTGE DSNSNNLE
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00196ampDAPTransfer from AT1G34370Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010094863.10.0Protein SENSITIVE TO PROTON RHIZOTOXICITY 1
SwissprotQ9C8N50.0STOP1_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1
TrEMBLW9QXR90.0W9QXR9_9R
STRINGVIT_18s0072g00840.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53403254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.20.0C2H2 family protein